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cviaii restriction enzyme  (New England Biolabs)


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    Structured Review

    New England Biolabs cviaii restriction enzyme
    Cviaii Restriction Enzyme, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/cviaii/pmc10848941-189-11-14
    Average 86 stars, based on 1 article reviews
    cviaii restriction enzyme - by Bioz Stars, 2026-10
    86/100 stars

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    Related Articles

    other:

    Article Title: Global loss of promoter–enhancer connectivity and rebalancing of gene expression during early colorectal cancer carcinogenesis
    Article Snippet: Organoids were cultured in a complete medium (advanced DMEM/F12 supplemented with 10 mM HEPES, 1× Glutamax, 1% penicillin–streptomycin, 1× B27 without vitamin A, 10 mM nicotinamide, 1.25 mM N -acetylcysteine, 500 nM A83-01 (Tocris), 10 μM SB202190 (Sigma-Aldrich), 100 ng μl −1 Noggin (R&D Systems), 1 μg ml −1 human recombinant R-spondin (Stemcell), 0.3 nM Wnt-FC (Immunoprecise), 50 ng ml −1 EGF (Shenandoah Biotechnology), 2.5 μM CHIR 99021 (Tocris) and 100 μg ml −1 Normocin (InvivoGen).

    Derivative Assay:

    Article Title: Ultrafine mapping of chromosome conformation at hundred basepair resolution reveals regulatory genome architecture.
    Article Snippet: To carry out triple digestion, the suspension was mixed with 50 μL of buffer G (ThermoFisher), 120 U MboI (DpnII) (Thermo Fisher ER0811, 10 U/μL), 120 U Csp6I (CviQI) (Thermo Fisher ER0211, 10 U/μL), 100 U Hin1II (NlaIII) (Thermo Fisher ER1831, 5 U/μL), and x μL of water, where x is determined to bring the total volume to 500 μL, empirically within a range of 100 to 150 μL, depending on the pellet size. .. The genomic triple digestion can be alternatively performed by using a combination of MboI (Thermo Fisher), Csp6I (Thermo Fisher), and CviAII (New England Biolabs) to generate consistent 5′ TA overhangs for other 3C- derived protocols requiring biotin- dA filling. .. In this case, after Triton quenching, the nuclei suspension was mixed with 50 μL of 10× CutSmart Buffer (NEB) and 100 U CviAII (NEB) and diluted to 500 μL.

    Suspension:

    Article Title: Ultrafine mapping of chromosome conformation at hundred basepair resolution reveals regulatory genome architecture.
    Article Snippet: The genomic triple digestion can be alternatively performed by using a combination of MboI (Thermo Fisher), Csp6I (Thermo Fisher), and CviAII (New England Biolabs) to generate consistent 5′ TA overhangs for other 3C- derived protocols requiring biotin- dA filling. .. In this case, after Triton quenching, the nuclei suspension was mixed with 50 μL of 10× CutSmart Buffer (NEB) and 100 U CviAII (NEB) and diluted to 500 μL. ..

    Article Title: Global loss of promoter-enhancer connectivity and rebalancing of gene expression during early colorectal cancer carcinogenesis.
    Article Snippet: After another centrifugation, the purified nuclei were resuspended in 170 μl of 10 mM Tris-HCl containing 0.5% Triton X-100 (Sigma, 93443). .. This was followed by incubation at room temperature with rotation for 15 min. Then, 10 μl of 1% SDS, 20 μl of Cutsmart buffer (New England Biolabs (NEB)), 3 μl each of HinP1I (NEB, R0124S), DdeI (NEB, R0175L), CviAII (NEB, R0640L) and FspBI (ThermoFisher, ER1762) and 0.6 μl of MseI (NEB, R0525M) were added to the suspension in the indicated order. ..

    Incubation:

    Article Title: Global loss of promoter-enhancer connectivity and rebalancing of gene expression during early colorectal cancer carcinogenesis.
    Article Snippet: After another centrifugation, the purified nuclei were resuspended in 170 μl of 10 mM Tris-HCl containing 0.5% Triton X-100 (Sigma, 93443). .. This was followed by incubation at room temperature with rotation for 15 min. Then, 10 μl of 1% SDS, 20 μl of Cutsmart buffer (New England Biolabs (NEB)), 3 μl each of HinP1I (NEB, R0124S), DdeI (NEB, R0175L), CviAII (NEB, R0640L) and FspBI (ThermoFisher, ER1762) and 0.6 μl of MseI (NEB, R0525M) were added to the suspension in the indicated order. ..



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    86
    New England Biolabs cviaii restriction enzyme
    Cviaii Restriction Enzyme, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/cviaii/pmc10848941-189-11-14
    Average 86 stars, based on 1 article reviews
    cviaii restriction enzyme - by Bioz Stars, 2026-10
    86/100 stars
      Buy from Supplier

    96
    New England Biolabs cviaii
    ( a ) Fragment size distribution of human genome (hg38) digested by the indicated restriction enzymes and their combination. Restriction site count: DdeI=4.95E6, <t>CviAII=4.59E6,</t> BfaI=2.66E6, <t>MseI=5.82E6,</t> <t>HinP1I</t> = 6.60E5, combined=1.91E7. ( b ) Frequency of intrachromosomal interactions by genomic distance for various sample types. ( c ) Count of unique interaction contacts identified across samples.
    Cviaii, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/cviaii/DdeI/pmc11584406-258-38-39
    Average 96 stars, based on 1 article reviews
    cviaii - by Bioz Stars, 2026-10
    96/100 stars
      Buy from Supplier

    Image Search Results


    ( a ) Fragment size distribution of human genome (hg38) digested by the indicated restriction enzymes and their combination. Restriction site count: DdeI=4.95E6, CviAII=4.59E6, BfaI=2.66E6, MseI=5.82E6, HinP1I = 6.60E5, combined=1.91E7. ( b ) Frequency of intrachromosomal interactions by genomic distance for various sample types. ( c ) Count of unique interaction contacts identified across samples.

    Journal: Nature Cancer

    Article Title: Global loss of promoter–enhancer connectivity and rebalancing of gene expression during early colorectal cancer carcinogenesis

    doi: 10.1038/s43018-024-00823-z

    Figure Lengend Snippet: ( a ) Fragment size distribution of human genome (hg38) digested by the indicated restriction enzymes and their combination. Restriction site count: DdeI=4.95E6, CviAII=4.59E6, BfaI=2.66E6, MseI=5.82E6, HinP1I = 6.60E5, combined=1.91E7. ( b ) Frequency of intrachromosomal interactions by genomic distance for various sample types. ( c ) Count of unique interaction contacts identified across samples.

    Article Snippet: This was followed by incubation at room temperature with rotation for 15 min. Then, 10 μl of 1% SDS, 20 μl of Cutsmart buffer (New England Biolabs (NEB)), 3 μl each of HinP1I (NEB, R0124S), DdeI (NEB, R0175L), CviAII (NEB, R0640L) and FspBI (ThermoFisher, ER1762) and 0.6 μl of MseI (NEB, R0525M) were added to the suspension in the indicated order.

    Techniques: